rs256475988 SNP Detail

Summary

• ID
  rs256475988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGTCTT AAATAGAGCC
  AGAGGGATTT CAAGAACAAG ACACGTCTTA GCCAGCAGGA TACTTGACTT GCAAGCATGA
  GGATCTGTGA TTGGATACAC AGGAAGCATG AGAAAAGCCA GTTACAGTGT CACATGCCTG
  TCTCCCAAGA ACAGAGACAC GAGAGGCAGA GACAGTCAGA TCCCTAGGAG CACACAGGCC
  R
  GCTTGGTCCA CGGTGTGAAT TTCTGCACTG TGTTAGTTAT TGTTTGGTTG CTGTGAGAAA
  ACATCTTAAC AAAAGCAACT CAGCAAAGGA AGGGTCCATT TTGGCTTGTA GCGTCGGGGA
  TACACTCCAT CCTGGAGGGG ACACATGGTG GCCAGAGGCA GCTGTACATT GCATGCTCAG
  TCAGGAAGCT AAGAGATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408111	CHEV_17_48487210	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256475988					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654913 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1713 bp distal
Rr335234	regulatory region 335234	912 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1468 bp downstream
Tssr145094	transcription start site region 145094	1440 bp downstream
Tssr145095	transcription start site region 145095	1392 bp downstream
Tssr145096	transcription start site region 145096	1359 bp downstream
Tssr145097	transcription start site region 145097	354 bp downstream
Tssr145098	transcription start site region 145098	12 bp downstream
Tssr145099	transcription start site region 145099	595 bp upstream
Tssr145100	transcription start site region 145100	624 bp upstream
Tssr145101	transcription start site region 145101	661 bp upstream
Tssr145102	transcription start site region 145102	760 bp upstream
Tssr148525	transcription start site region 148525	805 bp downstream