rs256480173 SNP Detail

Summary

• ID
  rs256480173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:85599662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATTGTTA TGGAAGCGAG
  GAGCAGCAAC AGCATGTGTG CGGACAGAGA GCCCCGAGAT CTCGCTGCCC GCTGGACGTC
  CCCCATGTCG GAGCAGGGCT TCTGCTTGCG TGACCCCAAA GGGACTTTTG GCTGCATGGC
  ACCGCACCCT GCACCGCAGA GAACTCTTGG TCTGGATAGA CGTTTAGACG CGTAGAGCTT
  Y
  GCTGGCCTGC TCCTGATGCT TAAAATTCAC GATCACTTTG ATGGGAAAGT TCGTGCAGAG
  CTAGCACCCG AAGCTCCGGG TCACTTAGAA AGATTCTGCA CTGGCGCGCG GGAATTTTTT
  CATTCCAGCA CCGAGTTGGT GGCTCCGCAC TGCTGGCTGC TGCAGGACCT AGAAGCGCCC
  CCGGAGCTGG GGAACAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397169229	MGP_WTSI_16_85803019	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256480173					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397169229	MGP_WTSI_16_85803019	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85599662 () rs orientation: forward

Symbol	Name	Function Class
Adamts1	ADAM metallopeptidase with thrombospondin type 1 motif 1	mRNA-UTR
Cpgi8390	CpG island 8390	within coordinates
D16Mit152	DNA segment, Chr 16, Massachusetts Institute of Technology 152	1060 bp proximal
Rr392078	regulatory region 392078	1104 bp downstream
Rr518655	regulatory region 518655	1416 bp distal
Rr518656	regulatory region 518656	329 bp proximal
Rr518657	regulatory region 518657	1830 bp proximal
Tssr141910	transcription start site region 141910	1490 bp upstream
Tssr141911	transcription start site region 141911	332 bp downstream
Tssr141912	transcription start site region 141912	1181 bp downstream