rs256487353 SNP Detail

Summary

• ID
  rs256487353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:109722956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTAATGT GTCTTAAAGC
  AGAGTGTGTT CAGAACCCGT TTGGAATAGC CGGTGAATAT GCATACTGTC ATGGTAATAC
  TTGAGAAGTC ACAAAAACAT TAAGAGTAGA CAATTTCCAA AATAAAGACA GGCATGGTAC
  CTGTAAGTTT AACACGGGAA ATAAGCCCCC CTTTTTTGAG AGAACGTTTC TCTGTGTAAC
  Y
  TTGGCTGTTC TGGAACCTAC TTTGTAGGAA CTAGGAACTC AGAGATCCTC CTGTCTCTGC
  CTCCCGAGTG CTGGAACTAA AGGCGCCCTA CCATGCCCCT CGACATAAGC CTTTTAAAGG
  GAATCTATTG ATTTCCATGC AACTTTAGTC TTAAATCTCG AACATCCAGG TGCTTTTGTG
  CTTTGCTAAT TTTATAGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394510	CHEV_7_117267263	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256487353					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109722956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	357 bp distal
Rr400541	regulatory region 400541	1676 bp downstream
Rr400542	regulatory region 400542	131 bp upstream
Rr653190	regulatory region 653190	1693 bp distal
Tssr68487	transcription start site region 68487	1614 bp downstream
Tssr68488	transcription start site region 68488	1454 bp downstream
Tssr68489	transcription start site region 68489	1426 bp downstream
Tssr68490	transcription start site region 68490	1170 bp downstream
Tssr68491	transcription start site region 68491	971 bp downstream
Tssr74250	transcription start site region 74250	846 bp upstream
Tssr74251	transcription start site region 74251	805 bp upstream
Tssr74252	transcription start site region 74252	720 bp upstream
Wee1	WEE 1 homolog 1 (S. pombe)	Intron