rs256524836 SNP Detail

Summary

• ID
  rs256524836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTGTCT GAGTGTCTGT
  GTGTCTGTGT CTGTGTGTGT GATGTGTGCG TGTGTGTGTG TGTGTGCGTG TGTGTGTGTG
  TGTGCGTGCG TGTGTGTGCG TGCGTGCGTG TGTGTGTGTG TGTGTGTGTG CACATTCATG
  TGTCTGTGTG TACACTGCTC CATTTTCTGA AAGGGAAAGT ACATTTCAGC ACGTACGGAC
  R
  GACCTTTCTC TTACTCATGG TACAAGCCCA CAGGACTTTT CCTGGTCCAC ACTAAGGAAC
  TTCTTCATTA TTTAAATATA TTCTTCCAAT GCTTGTTACT TTTACCTCTC CCCAGGATTA
  ATTATCCAGC ATCCCCTATA AGACAGAGTA TCTTAATAAT ACAAAGTGCC TGAGAAGGAA
  AGAAAAATAA ATAAATAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387277533	MGP_WTSI_12_109177320	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256524836					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387277533	MGP_WTSI_12_109177320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905369 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	780 bp downstream
Tssr117636	transcription start site region 117636	448 bp upstream
Tssr117637	transcription start site region 117637	419 bp upstream
Tssr117638	transcription start site region 117638	361 bp upstream
Tssr117639	transcription start site region 117639	342 bp upstream
Tssr117640	transcription start site region 117640	326 bp upstream
Tssr117641	transcription start site region 117641	309 bp upstream
Tssr117642	transcription start site region 117642	271 bp upstream
Tssr117643	transcription start site region 117643	152 bp upstream
Tssr117644	transcription start site region 117644	36 bp upstream
Tssr117645	transcription start site region 117645	within coordinates
Tssr117646	transcription start site region 117646	20 bp downstream
Tssr117647	transcription start site region 117647	36 bp downstream
Tssr117648	transcription start site region 117648	96 bp downstream
Tssr117649	transcription start site region 117649	122 bp downstream
Tssr117650	transcription start site region 117650	160 bp downstream