rs256527817 SNP Detail

Summary

• ID
  rs256527817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGTGAAT TTCTGCACTG
  TGTTAGTTAT TGTTTGGTTG CTGTGAGAAA ACATCTTAAC AAAAGCAACT CAGCAAAGGA
  AGGGTCCATT TTGGCTTGTA GCGTCGGGGA TACACTCCAT CCTGGAGGGG ACACATGGTG
  GCCAGAGGCA GCTGTACATT GCATGCTCAG TCAGGAAGCT AAGAGATACA CGCAGCCTCT
  R
  GGTTCTCTTT GTCCTTTTGA TATAGCTAGG GATTTTGGCC CACGGAATGT TACTGCCCAT
  AGGTCAGGGT GGATCTTCTT ACACCAAAGA ACTGAGTCCA GATAGTCTCT CATTCATGTT
  CCTATAGGCT AACCTGACCT AGAAAATCCC TCACGGGCAA GCTCATAGGT TTGCCCCTAG
  ATGATTCTAG AGCCCGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408117	CHEV_17_48487421	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256527817					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655124 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1924 bp distal
Rr335234	regulatory region 335234	1123 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1679 bp downstream
Tssr145094	transcription start site region 145094	1651 bp downstream
Tssr145095	transcription start site region 145095	1603 bp downstream
Tssr145096	transcription start site region 145096	1570 bp downstream
Tssr145097	transcription start site region 145097	565 bp downstream
Tssr145098	transcription start site region 145098	223 bp downstream
Tssr145099	transcription start site region 145099	384 bp upstream
Tssr145100	transcription start site region 145100	413 bp upstream
Tssr145101	transcription start site region 145101	450 bp upstream
Tssr145102	transcription start site region 145102	549 bp upstream
Tssr148525	transcription start site region 148525	594 bp downstream