rs256539156 SNP Detail

Summary

• ID
  rs256539156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92422332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCATGGC AAGAAGCCAA
  ATCAGGTGTA GAGTAGAGGA AAGGAGAAGA GAGTGCTATA CAGATTTTGG AGAATAAAAA
  CAAAACATTC ATCTTGTGGT GAGAGACAAA GTATGCCAAA CCAATCAAGT GTAGGATACA
  GAATGAGGTG GCTTATATTT TAGTGAAATA ATTTGAATTG TAGGCAAATG GGTTAGGATT
  R
  TTTCCGGTTC TGTGGAATCT TTGTGTTTAG GGATGAAAAC AAAAATCATG AGTATGATGG
  GTCAAGCCAT AATACAGAGT TCCACAGTTT GGGTACAGGA AGCAGCCACA GGAAAGTTGG
  CCAGTGATAA AAAGCTTGAA CCAGGGCATC AAGAGGTATG TTACTTAAGC AGGAAAGAAT
  GAATGGAAGA AGGCAGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074137	CHEV_9_92435117	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256539156					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92422332 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	1578 bp proximal
Gm37545	predicted gene, 37545	196 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	1944 bp upstream
Rr684631	regulatory region 684631	1655 bp distal
Rr684632	regulatory region 684632	1454 bp proximal
Tssr86520	transcription start site region 86520	1976 bp upstream