rs256553520 SNP Detail

Summary

• ID
  rs256553520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7353387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGTCTCA CATTTAAAGT
  GATTTTTAAC AGTGGCACTA CTGCTTGGTT GAGGGGGAGA GGGCATGCAG AGAAAGAAAA
  TTTAAATATT CCCTTCTGTG ATTTTGCAAC TGAGTATGAT AATGTCCTCC AGGAACGCTT
  CTCCTGAATT TCATAGGAAA CAGGACTATT TTTTATTTTC CATTAAGAGA AAATATTTAA
  R
  ATGAATAGCC CTTCCTCTTA CAAAATTCCC CCAAATGAAC ATCAAAATGT ATTTTCAGGA
  GCCCCAGTGA AACCCCCATC CTTGACAAAA CCTAGCAGTC CACCATCAAC TTTCTGTCAC
  CAAAGCTTGA GTTTTGATGC TGTCACAACA GTGGGAGAGA AAATCTTTTT CTTTAAAGAC
  TGGTAAGATT GTTTTCATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560325	MGP_WTSI_9_7353387	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256553520					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560325	MGP_WTSI_9_7353387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7353387 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	156 bp upstream
Tssr83712	transcription start site region 83712	1402 bp downstream
Tssr83713	transcription start site region 83713	1001 bp downstream
Tssr83714	transcription start site region 83714	817 bp downstream
Tssr83715	transcription start site region 83715	773 bp downstream
Tssr83716	transcription start site region 83716	480 bp downstream
Tssr83717	transcription start site region 83717	469 bp downstream
Tssr83718	transcription start site region 83718	435 bp downstream
Tssr83719	transcription start site region 83719	402 bp downstream
Tssr83720	transcription start site region 83720	369 bp downstream
Tssr83721	transcription start site region 83721	138 bp downstream
Tssr83722	transcription start site region 83722	53 bp upstream
Tssr83723	transcription start site region 83723	177 bp upstream
Tssr83724	transcription start site region 83724	498 bp upstream
Tssr83725	transcription start site region 83725	622 bp upstream
Tssr83726	transcription start site region 83726	711 bp upstream
Tssr83727	transcription start site region 83727	1323 bp upstream
Tssr83728	transcription start site region 83728	1415 bp upstream
Tssr83729	transcription start site region 83729	1437 bp upstream
Tssr83730	transcription start site region 83730	1917 bp upstream
Tssr83731	transcription start site region 83731	1931 bp upstream
Tssr83732	transcription start site region 83732	1972 bp upstream
Tssr88067	transcription start site region 88067	374 bp upstream
Tssr88068	transcription start site region 88068	328 bp upstream
Tssr88069	transcription start site region 88069	88 bp downstream
Tssr88070	transcription start site region 88070	1364 bp downstream