rs256573314 SNP Detail

Summary

• ID
  rs256573314
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93269689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCAGCCT GACAATTGGT
  ATTTTTGTGT GAAGGTGGGT ATTAAACCCA GAGCTAGTCA CCTATTGGGC AAACCTTCCA
  CCACTGACTG ATAAAGTATG ACTATTTGCC TTCACTATTC TGCATATTAC ATACACAGGC
  ACATGCACTC AGTATGTGAT CCTAAAAAGC AACAACTCAT TATGAAATAA GAGATGAGTA
  S
  CGACAGTGTT CAAGGCTATA TGTGACACCA CCAGACTCAA ACAAAATAAA GATGAGTAGG
  TGTTAGATAG CAGTTTTCAA GTAGAGTGTT TTAATGTGAA AGATGTACAG GCATCTTCTC
  TAGGTATCTA AATGCACTAA TTACTGTTAC AGCAAACAAT GATACGATCA TACCGTGGTT
  TTTCTACTTT TAAAACCAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350517915	MGP_WTSI_1_95238544	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256573314					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350517915	MGP_WTSI_1_95238544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93269689 () rs orientation: forward

Symbol	Name	Function Class
Cpgi598	CpG island 598	522 bp proximal
Pask	PAS domain containing serine/threonine kinase	within coordinates
Ppp1r7	protein phosphatase 1, regulatory subunit 7	1661 bp upstream
Rr29849	regulatory region 29849	within coordinates
Rr366968	regulatory region 366968	694 bp upstream
Rr396176	regulatory region 396176	1456 bp upstream
Tssr163	transcription start site region 163	1715 bp upstream
Tssr8169	transcription start site region 8169	1651 bp upstream
Tssr13015	transcription start site region 13015	595 bp downstream
Tssr13016	transcription start site region 13016	615 bp downstream
Tssr13017	transcription start site region 13017	642 bp downstream
Tssr13018	transcription start site region 13018	655 bp downstream
Tssr13019	transcription start site region 13019	767 bp downstream
Tssr13020	transcription start site region 13020	901 bp downstream
Tssr13021	transcription start site region 13021	934 bp downstream
Tssr13022	transcription start site region 13022	1531 bp downstream