rs256575054 SNP Detail

Summary

• ID
  rs256575054
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45924254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGAGTGA CGTCTGTCGG
  CAACCCCCCT CTTTCGGCCC CCCCGCGCCC CCTCCCCCCC GGCCGGCTCC CCGCGGCCCC
  GGAGGTTTCA CTGCACAACA AGATGGCGGC GGCGGCGGCG AGCGGAGCTG GCGGGGTTGC
  CGTGGCCGGA GCAGGGGGAG CCGGGCCGGC CGGCCGCCTG CTGCCTCCGC CCGCCGCGGG
  S
  CCCCCGGCAG CCCCCGCCGC AGTGCCCCCG GCCGCCGTCC CGGCGCGTCC CACAGCCCCG
  GCCTCCCGCG GGTCGATGGC CGCTCGCATC GGCTACTACG AGATCGACCG CACCATCGGC
  AAGGGCAACT TCGCTGTGGT CAAGCGGGCC ACGCACCTCG TCACCAAGGC CAAGGTAGTG
  GCGCTGGGGA CCGCGCGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377446847	MGP_WTSI_9_45821039	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256575054					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377446847	MGP_WTSI_9_45821039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45924254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21700	CpG island 21700	within coordinates
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	266 bp upstream
Rr401349	regulatory region 401349	153 bp downstream
Rr678026	regulatory region 678026	1627 bp distal
Rr678027	regulatory region 678027	126 bp distal
Rr678028	regulatory region 678028	176 bp distal
Rr678029	regulatory region 678029	1603 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84822	transcription start site region 84822	135 bp downstream
Tssr84823	transcription start site region 84823	96 bp downstream
Tssr89308	transcription start site region 89308	263 bp upstream