rs256581351 SNP Detail

Summary

• ID
  rs256581351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127689791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGAGGGC ATTTCCACCG
  AGCCCGGCCC CGCCCGTCAA CCGCTCGCCG CGTGCCCAGC CGCCACCCCG CGGCCCGCGC
  GCCCGCGCTC ACCTGCTCGC CCTCGTCCTG CGGCCGCCGG CGCCGCGGGC TCGCCCCGTG
  CTCCGGCTCC TCAACCCGCC CGGCCGGCGC CGCCCCGTCC TCGTCGCACT CCCCGCCGGC
  R
  CTGCCGGCGC CGCCCCGCAG CAGCTTCCTG GCCGAGCACA TCCCACCGCC GACTCCGGCC
  GCCCGCACGG CTGCCGCTGG CCACACCGGG ACTCCCGACG CACACGGGAA TCCTTAGAAG
  CGCGCCCGCC GGCCTGGGGG CCAGAAGTGC AGGAGCCGCC CGCCCCTCCT GTCAGCCGCT
  CGCCCCACCC CCAGCTCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359650142	MGP_WTSI_3_127599060	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256581351					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359650142	MGP_WTSI_3_127599060	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127689791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	within coordinates
Fam241a	family with sequence similarity 241, member A	Coding-Synonymous
Rr398009	regulatory region 398009	131 bp upstream
Rr584895	regulatory region 584895	1835 bp distal
Rr584896	regulatory region 584896	123 bp distal
Rr584897	regulatory region 584897	136 bp proximal
Tssr35606	transcription start site region 35606	1534 bp upstream
Tssr35607	transcription start site region 35607	629 bp upstream
Tssr35608	transcription start site region 35608	78 bp downstream
Tssr35609	transcription start site region 35609	105 bp downstream
Tssr35610	transcription start site region 35610	129 bp downstream