rs256582490 SNP Detail

Summary

• ID
  rs256582490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130545329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCTCCC TCAGGAAACT
  GGTGCCCTCC TCTAAAATGT CACTGTTCTC AGGAGGCAGA GGCAGAGGCA GGCGGATTTC
  TGAGTTCAAG GCCAGCCTGG TCGACAAAGT GAGTTCCAGG ACAGCCAGGG CTACACAGAG
  AAACCTTGTC TTGAAAAAAC AAACAAACAA AAACCCCCAA AACAAACAAA AACCAACCAA
  M
  CAAACAAAAA TGTCACTGTT TCCTTCTCTC GACCCTCCCT GGCCATGGCC TCTCCTCACA
  TCTCCTAACT CCCTCATCTC GTCCCCTCCA AGCCCCTCAT CTTACCCCTT CTTGAGTTGT
  GCCCGTGGCC TGGGAAGGGC TCTGCAAGAA GGCCTCATCC CCTCTGGTGA TCTGCTCACG
  TGTGGAAGGT GGAGTGGCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318838	CHEV_4_130373933	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256582490					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130545329 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	1165 bp downstream
Tssr39264	transcription start site region 39264	1107 bp downstream
Tssr39265	transcription start site region 39265	573 bp upstream
Tssr39266	transcription start site region 39266	595 bp upstream
Tssr39267	transcription start site region 39267	613 bp upstream
Tssr39268	transcription start site region 39268	637 bp upstream
Tssr39269	transcription start site region 39269	684 bp upstream
Tssr39270	transcription start site region 39270	709 bp upstream
Tssr39271	transcription start site region 39271	748 bp upstream
Tssr39272	transcription start site region 39272	770 bp upstream
Tssr39273	transcription start site region 39273	830 bp upstream
Tssr39274	transcription start site region 39274	872 bp upstream
Tssr39275	transcription start site region 39275	888 bp upstream
Tssr39276	transcription start site region 39276	924 bp upstream
Tssr39277	transcription start site region 39277	940 bp upstream
Tssr39278	transcription start site region 39278	953 bp upstream
Tssr43599	transcription start site region 43599	671 bp downstream
Tssr43600	transcription start site region 43600	694 bp downstream
Tssr43601	transcription start site region 43601	751 bp downstream