rs256596213 SNP Detail

Summary

• ID
  rs256596213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68514936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGACGCCT GACACACTCC
  ACACACCCTC TCCCTAGCCC GGGTCGGATG GGGAGCTCAC CGCGGCGTTT CTCCCTTCCA
  TCTTCCATCG CCCGCGCGGG GCTCCGGGCC GCGGGGAACC GGGCTGGGCG CGCGAGTGCG
  GGCGGCTCTT TGTTGCGCGC CCCGGGACGG ACAGCCGTGG CCCACGGCGG CGGCGGCGGC
  R
  GCGGCGGCGG CAGCGCGCAC CCGGGCGTTA GCGGCGGAGC CCGCGGCGGA CACCCGGGCC
  GGCCCCCGGC AACGTCAAGG CGAAGGCGGC GGGGGCGGCG CCCGGCACGG AGGCGGAGGC
  GGCGTCGGCG GAGGCTCGGC TCGGCTCGGC TCGGCTCGGC GGAGTAGCGT CCTGCAGCCC
  TCTGCTGCCT GTTGCTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss375054713	MGP_WTSI_8_70586183	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs256596213					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375054713	MGP_WTSI_8_70586183	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68514936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20399	CpG island 20399	within coordinates
Psd3	pleckstrin and Sec7 domain containing 3	within coordinates
Rr664367	regulatory region 664367	68 bp distal
Rr664368	regulatory region 664368	within coordinates
Tssr81474	transcription start site region 81474	908 bp upstream
Tssr81475	transcription start site region 81475	within coordinates
Tssr81476	transcription start site region 81476	160 bp downstream