rs256598860 SNP Detail

Summary

• ID
  rs256598860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120238964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAAGGG AGGCCACTCC
  TCTCAACTAA CCTGGTGTCG GGGGCGCCCT ACGATGGAAG GGAACACGGC CCTGGGGGCG
  TCGTCGCCAG CAAAGCCGGC TTTGCACATG CCGGAGCCAT TGTCAATGAC GAGTGCGGCG
  ATTTCTTCTT CCATTGCGAT CTGCGCAGGA AGAAGCCCCG GAATTAGCGC AGCCCTCACC
  R
  AACTCAGAAA ATGTCCTCGG CCAGGGCCGA GCCACCCCGG AGGAGTGCAG TCCCCACCCC
  GGGCGGCGTA ACCGTCGGCT ACCGGCAGCG CCCCGTTCCG CCGCGGCGAG GAGGGGCTGC
  GCATTGCGTC GGGCCCCGCC CTGCCCCCAG CCGCGGCTGC AGACCCAGGC CCACCCGTCA
  GGCGCCCTGC GCTCCGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384941858	MGP_WTSI_11_120209452	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256598860					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384941858	MGP_WTSI_11_120209452	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120238964 () rs orientation: forward

Symbol	Name	Function Class
0610009L18Rik	RIKEN cDNA 0610009L18 gene	540 bp upstream
Actg1	actin, gamma, cytoplasmic 1	within coordinates
Cpgi4301	CpG island 4301	within coordinates
Gm55891	predicted gene, 55891	1319 bp upstream
Gm72337	predicted gene, 72337	663 bp downstream
Mir6935	microRNA 6935	725 bp upstream
Tssr3756	transcription start site region 3756	1140 bp upstream
Tssr106280	transcription start site region 106280	544 bp upstream
Tssr112287	transcription start site region 112287	679 bp upstream
Tssr112288	transcription start site region 112288	41 bp downstream
Tssr112289	transcription start site region 112289	66 bp downstream
Tssr112290	transcription start site region 112290	357 bp downstream
Tssr112291	transcription start site region 112291	375 bp downstream
Tssr112292	transcription start site region 112292	613 bp downstream
Tssr112293	transcription start site region 112293	1276 bp downstream
Tssr112294	transcription start site region 112294	1706 bp downstream