rs256607551 SNP Detail

Summary

• ID
  rs256607551
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44397219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCAAGA ATTTCCTTTT
  TGTTGAACCC ACACTGACCC TGAGCAGTAG GTATTCCTTG GTACTTACTG TTATTGGTTT
  CTTTTTAGAC AAGGTCTCTG AAGCTCTGAC TGTCCTGGAA CTCACAGTGT AGACCAAACT
  GGCCTCAAGC TTCATAGATC TGTGTCTGCC TTTGAGCTGG GTCCAGCTCC TCGGTCTTTT
  W
  AAAAAGGAAG TGAAATTTAA AAGAGTTGAG GTTACCTGTG GTCACGCTTA GCCAGTGTAT
  GGTGGAGCTA GGAATTGAGT ATCAGATGAG TGGCTCAAAG GTAAAGGCAG GCCTGGCATG
  GTGGCGCATG CCTTTAATCC CAGCACTCAG GAGGCAGAGG CAGGCGGATT TCTGAGTTCA
  AGGCCAGCCT GGTCTACAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552377	MGP_WTSI_19_44483270	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256607551					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552377	MGP_WTSI_19_44483270	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44397219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10894	CpG island 10894	1129 bp distal
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	951 bp distal
Gm59215	predicted gene, 59215	1631 bp downstream
Rr363360	regulatory region 363360	within coordinates
Scd1	stearoyl-Coenzyme A desaturase 1	1071 bp upstream
Tssr5525	transcription start site region 5525	1305 bp upstream
Tssr5526	transcription start site region 5526	1272 bp upstream
Tssr5527	transcription start site region 5527	1262 bp upstream
Tssr5528	transcription start site region 5528	1232 bp upstream
Tssr5529	transcription start site region 5529	1181 bp upstream
Tssr156614	transcription start site region 156614	742 bp downstream
Tssr159517	transcription start site region 159517	1282 bp upstream
Tssr159518	transcription start site region 159518	1211 bp upstream
Tssr159519	transcription start site region 159519	1157 bp upstream
Tssr159520	transcription start site region 159520	1112 bp upstream
Tssr159521	transcription start site region 159521	1068 bp upstream
Tssr159522	transcription start site region 159522	958 bp upstream
Tssr159523	transcription start site region 159523	903 bp upstream
Tssr159524	transcription start site region 159524	879 bp upstream
Tssr159525	transcription start site region 159525	23 bp upstream
Tssr159526	transcription start site region 159526	4 bp upstream
Tssr159527	transcription start site region 159527	1677 bp downstream
Tssr159528	transcription start site region 159528	1695 bp downstream