rs256609669 SNP Detail

Summary

• ID
  rs256609669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156263295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCGGAAG CCGCGCCGCC
  GCCGCCAGGT TAGCAGGGCG CGGAGACCGA GCAGGCTGTT GCTACGTCCC GAGCTCGCGT
  GCTGGAGGAC GTGCGTGGCC GAAGCTACGA TTCGTGTCTT TGCGGGTACG TGTCGGGGTC
  CACATCTCCG GGTGTGCGTT TAATGTGAAC GCGCGTGTGT CTGTGGGTCG GTGCAAGTGG
  Y
  GTGTACGTGC GTGTGCATCT GAGTAAGGGG CTGGGTGGTG TACTAATCTG GTAAGGGTCT
  GTGTGCCCTG GTTTGCTTAT CCGGAGATGT GCCTAGAGAG GGTGTGTCCC AATGTGTAAC
  AGTGTGTACA TCTGGATGAG GCAGTGTGCC TATGCTGATG ATGGCTTCGC TTGTGGCTGA
  AGCCTATGGC GGGTGTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320579298	CHEV_2_156247111	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256609669					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156263295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	within coordinates
Epb41l1	erythrocyte membrane protein band 4.1 like 1	within coordinates
Rr55936	regulatory region 55936	within coordinates
Tssr21156	transcription start site region 21156	624 bp downstream
Tssr21157	transcription start site region 21157	513 bp downstream
Tssr21158	transcription start site region 21158	332 bp downstream
Tssr21159	transcription start site region 21159	310 bp downstream
Tssr21160	transcription start site region 21160	299 bp downstream
Tssr21161	transcription start site region 21161	261 bp downstream
Tssr21162	transcription start site region 21162	252 bp downstream
Tssr21163	transcription start site region 21163	232 bp downstream
Tssr21164	transcription start site region 21164	201 bp downstream