rs256626872 SNP Detail

Summary

• ID
  rs256626872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116510220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTTTT TCTTTTCTTT
  TTAAAAAATT ATTTTATTAC CAGGTGGTGG TGATACATGC CATTAATCCT AGCAATCAGG
  AGAAGAGGCA AGCAGATCTC CAAATTCAAG GCCAGCCTGT TCTACAGAGT GCAACCCTGT
  CTCAAAAAAA CAAAAACAAA AATTTATTTT TACTTGTATG TGTGTGTGCC CGAGTATATG
  Y
  CTGTTTACCA CATGCAGGCA GGAGCTTAAG GAGGTGAGAA ATGACCTAGA CCTGCAGGTC
  ATTCTTCAGT GACAGGGTCC TGAGAGAGAG GACCGGGAGA TCAGAAGATA AGCAGAAAGG
  TAAAGTTTCA GATGGGGAGG TCTTTCACAA ACCATGTCTG TTAAGAAGCA CAGCATCTTA
  TATATTATTT CCAGGGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277679	CHEV_4_116325628	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256626872					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116510220 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	1349 bp upstream
Cpgi14637	CpG island 14637	1316 bp distal
Rr597944	regulatory region 597944	1354 bp distal
Rr597945	regulatory region 597945	1336 bp distal
Rr597946	regulatory region 597946	853 bp distal
Tssr38539	transcription start site region 38539	1488 bp downstream
Tssr42909	transcription start site region 42909	1614 bp upstream
Tssr42910	transcription start site region 42910	1597 bp upstream
Tssr42911	transcription start site region 42911	1577 bp upstream
Tssr42912	transcription start site region 42912	1474 bp upstream
Tssr42913	transcription start site region 42913	1452 bp upstream
Tssr42914	transcription start site region 42914	1387 bp upstream
Tssr42915	transcription start site region 42915	1358 bp upstream
Tssr42916	transcription start site region 42916	1341 bp upstream