rs256638238 SNP Detail

Summary

• ID
  rs256638238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77443898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTGGG CAGGGGAAGG
  GGAAGGGATG ATGCCTCAAG GTGTGCCTTC AGGTTCTTGA TGGAGCCTCT CTCCTGCCGA
  ACCATTTCTC AGACTAGAAG GAGCCATGCT CCTACCTAAA GCTGTTAGGA CCCAGTGCAG
  GGCAGGTTGC TTTCTGCACC CTGCACCCGA GCTTCCTGAC ACTAGTCTAC CTCTCTCTCC
  R
  GGAATAAAAA TGTTGCTGAG GACACCCCTG GGAAGCAGGG TGCTTCCATG GAGCATGCTC
  TGTGGAACCG TGGGGGAAAA GAAGGCTGGC GTGAGGACAG GGAAAAAGCT TGATCTGCAA
  GTAGAGCAAG GGATCTGTTT CCTAGAAATA AATGGTTCTC GAGAGCTGGA GAGACAGCTT
  AGCGGTTAAG AGCACTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380971381	MGP_WTSI_10_77070809	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256638238					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380971381	MGP_WTSI_10_77070809	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77443898 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1760	CpG island 1760			992 bp distal
Gm49325	predicted gene, 49325			Intron
Rr402005	regulatory region 402005			1347 bp downstream
Rr434546	regulatory region 434546			1483 bp distal
Rr434547	regulatory region 434547			236 bp distal
Sumo3	small ubiquitin-like modifier 3			Intron
				Noncoding-Transcript-Variant
Tssr94265	transcription start site region 94265			1997 bp downstream
Tssr94266	transcription start site region 94266			1824 bp downstream
Tssr94267	transcription start site region 94267			1809 bp downstream
Tssr94268	transcription start site region 94268			1411 bp downstream
Tssr94269	transcription start site region 94269			1384 bp downstream
Tssr94270	transcription start site region 94270			1346 bp downstream
Tssr98239	transcription start site region 98239			945 bp upstream