rs256641391 SNP Detail

Summary

• ID
  rs256641391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3335163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTTTCT ATCACAAGTA
  GATGAACTAG ATTAAGTTCG GTCGAGTTTT GACTGTGCCA TATAAGACGT CCTTTACTAT
  TACCCGCAGT CATGTAGCGC TAAAGACAAA TCGCGATGGT AGAATTGAAA TACTAAAGGT
  TCACATAAAA TCCTGGCTCG TGGAAGACTG AGACAGGAGG CTGCAGACTG GGCCTTCGGG
  R
  CCAGAACTTG CACACACCAT AACAGAAAAA TAAATAAATA AATAAATAAA TAAATAAATA
  AAAATAAAAA AAGGCAGAAA GAGGGGCAAG ATAAAGAAGT AAAAAGGTAA TGGCTATGAG
  TGTTGTCCCA CCAAAGTTCC AGCTCTTACA TTACAAGCCT CTGCCGCCAG GCTGCTATGT
  TGACACCCTA GCCTTCCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352905784	MGP_WTSI_2_3251398	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256641391					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352905784	MGP_WTSI_2_3251398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3335163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11150	CpG island 11150	1223 bp distal
Rpp38	ribonuclease P/MRP 38 subunit	1483 bp upstream
Rr396749	regulatory region 396749	1290 bp downstream
Rr550889	regulatory region 550889	1494 bp distal
Rr550890	regulatory region 550890	993 bp distal
Rr550891	regulatory region 550891	1552 bp proximal
Tssr15888	transcription start site region 15888	963 bp downstream
Tssr22355	transcription start site region 22355	1685 bp upstream
Tssr22356	transcription start site region 22356	1666 bp upstream
Tssr22357	transcription start site region 22357	1476 bp upstream
Tssr22358	transcription start site region 22358	1856 bp downstream