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rs256651375 SNP Detail
Summary
  • ID
    rs256651375
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr5:137178456 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCAGTGGTG GTGACATCAC
CAGTGGTTGT GATTTCAGCA GTGGTTGTGA CTTCAGCAGT GGTGGTGACA TCAGCAGTGG
TGGTGACATC ACCAGTGGTT GTGACTTCAA CAGTGGTGGT GACATCAGCA GTGGTGGTAA
CATCAGCAGT GGTGGTGACA TCAGCAGTGG TTGTGACATC AGCAGTGGTT GTGACTTCAG
C
AGTGGAGGTG GTATCAGCAG TGGTGGTGAC ATAAGCAGTG GTTGTGACTT CAGAAGTGGT
GGAAACATCA CTAGTGGTTG TGATATCAGC AGTTGTGGTC TCTTCAGAAG TGGTGGTGAC
ATCACTAGTG GTTGTGACAT CAGCAGTTGT GGTGACTTCA CCTGTGGTGG TGACATCATC
AGTGGTTGTG ATTTCTACAG                                            

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S5/SvEvBrd
A/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
DBA/1J
I/LnJ
JF1/MsJ
LEWES/EiJ
MOLF/EiJ
NON/ShiLtJ
PL/J
PWK/PhJ
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
ss366873412 MGP_WTSI_5_137625704 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S5/SvEvBrd
A/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
DBA/1J
I/LnJ
JF1/MsJ
LEWES/EiJ
MOLF/EiJ
NON/ShiLtJ
PL/J
PWK/PhJ
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
rs256651375 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss366873412 MGP_WTSI_5_137625704 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:137178456 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Muc17 mucin 17, cell surface associated within coordinates
Tssr1677 transcription start site region 1677 340 bp upstream
Tssr1678 transcription start site region 1678 876 bp downstream
Tssr1679 transcription start site region 1679 1819 bp downstream
Tssr1680 transcription start site region 1680 1839 bp upstream
Tssr1681 transcription start site region 1681 1862 bp downstream
Tssr1682 transcription start site region 1682 1879 bp downstream
Tssr1683 transcription start site region 1683 1968 bp downstream
Tssr1684 transcription start site region 1684 1984 bp downstream
Tssr1685 transcription start site region 1685 1998 bp upstream
Tssr49309 transcription start site region 49309 170 bp upstream
Tssr49310 transcription start site region 49310 530 bp upstream
Tssr49311 transcription start site region 49311 544 bp upstream
Tssr49312 transcription start site region 49312 924 bp upstream
Tssr49313 transcription start site region 49313 1172 bp upstream
Tssr49314 transcription start site region 49314 1443 bp upstream
Tssr49315 transcription start site region 49315 1459 bp upstream
Tssr53919 transcription start site region 53919 30 bp downstream
Tssr53920 transcription start site region 53920 46 bp downstream
Tssr53921 transcription start site region 53921 201 bp downstream
Tssr53922 transcription start site region 53922 242 bp downstream
Tssr53923 transcription start site region 53923 283 bp downstream
Tssr53924 transcription start site region 53924 297 bp downstream
Tssr53925 transcription start site region 53925 335 bp downstream
Tssr53926 transcription start site region 53926 366 bp downstream
Tssr53927 transcription start site region 53927 515 bp downstream
Tssr53928 transcription start site region 53928 533 bp downstream
Tssr53929 transcription start site region 53929 570 bp downstream
Tssr53930 transcription start site region 53930 635 bp downstream
Tssr53931 transcription start site region 53931 660 bp downstream
Tssr53932 transcription start site region 53932 676 bp downstream
Tssr53933 transcription start site region 53933 714 bp downstream
Tssr53934 transcription start site region 53934 746 bp downstream
Tssr53935 transcription start site region 53935 797 bp downstream
Tssr53936 transcription start site region 53936 818 bp downstream
Tssr53937 transcription start site region 53937 908 bp downstream
Tssr53938 transcription start site region 53938 944 bp downstream
Tssr53939 transcription start site region 53939 998 bp downstream
Tssr53940 transcription start site region 53940 1174 bp downstream
Tssr53941 transcription start site region 53941 1214 bp downstream
Tssr53942 transcription start site region 53942 1273 bp downstream
Tssr53943 transcription start site region 53943 1438 bp downstream
Tssr53944 transcription start site region 53944 1487 bp downstream
Tssr53945 transcription start site region 53945 1497 bp downstream
Tssr53946 transcription start site region 53946 1518 bp downstream
Tssr53947 transcription start site region 53947 1626 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory