rs256662078 SNP Detail

Summary

• ID
  rs256662078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTTAAA GCAGTTTCTG
  ACACCAAAGC TAGATTACAG ACCAAGGGAA GGAGACGGAC TGAGGGCGGC AGGGAAGATA
  GAAACAAAAT GGGGAGATAT GTGTGTGGTA GTCAGAGGCT GAACAACAGG CAGGGCAGGG
  TAAATGCGAG ATCAGGGCCT GGGTACATCT ATGTGGTTGG GGGAAGAGCC GGAAGGAGGC
  R
  AATGTGGTCG ACACTATGGC GAATGTGGAA GACAGTATGG GGAGTTCAGG TGAGGGAGAA
  GACGTTAAGA GCTCTCAATC ATTACCGAAA GCCAGTACTC CAGCTGCCTC TCAAAGTCAT
  GGAAGTTGTC AGTGACTATC GGTATAGTGG CCCTTTCCTT CCTCAGTTTA TCCTCAAAAT
  AAAAAAGGCC AGATTGAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353646	CHEV_7_109397730	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256662078					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	426 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1685 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	862 bp proximal
Rr652564	regulatory region 652564	1705 bp proximal
Tssr2354	transcription start site region 2354	1043 bp upstream
Tssr68327	transcription start site region 68327	1458 bp downstream
Tssr68328	transcription start site region 68328	404 bp upstream
Tssr68329	transcription start site region 68329	486 bp upstream
Tssr68330	transcription start site region 68330	1004 bp upstream
Tssr73939	transcription start site region 73939	146 bp downstream
Tssr73940	transcription start site region 73940	196 bp downstream
Tssr73941	transcription start site region 73941	238 bp downstream
Tssr73942	transcription start site region 73942	326 bp downstream
Tssr73943	transcription start site region 73943	859 bp downstream
Tssr73944	transcription start site region 73944	870 bp downstream
Tssr73945	transcription start site region 73945	911 bp downstream
Tssr73946	transcription start site region 73946	1107 bp downstream
Tssr73947	transcription start site region 73947	1250 bp downstream
Tssr73948	transcription start site region 73948	1275 bp downstream
Tssr73949	transcription start site region 73949	1311 bp downstream
Tssr73950	transcription start site region 73950	1360 bp downstream