rs256678812 SNP Detail

Summary

• ID
  rs256678812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14950937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGATGT CTAGGTGCCT
  CCATAGAAAC ACAAAAAAAC TGTACCCTTC TCAATTTGAA TTCTAAATAA TATGGCCTCA
  GGTCCACAAT AGATTCAATA CAAAAAAATT GTTCTCAAAG TCAAATAAGA AAAAAAGTGT
  TAGGTGAAGA GAAATGTTTA AATAAAAATA CACAAAAAGA ACATTGAAAG GTGTGTCCCC
  R
  GGACACCCAC GGTCCCTGGG AAGCCATACA GCTACCTTTC TTTTCTATTT TTTAAGTTTT
  GTGTTTTTTG TTTTGTTTTG TTTTGGGGGG GGGGGGTTGG TTTCGGCTTG TCAAATACAA
  ATTCCTTTGC CAGGAAGGGG AAGTTCTCAT CTCCTTGGAA GACATTTTTA AAATCCAATT
  CCAAAAAGCA AAGCGATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357061066	MGP_WTSI_3_14885877	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256678812					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357061066	MGP_WTSI_3_14885877	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14950937 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	396 bp upstream
Cpgi12992	CpG island 12992	138 bp proximal
Rr573722	regulatory region 573722	110 bp proximal
Rr573723	regulatory region 573723	262 bp proximal
Rr573724	regulatory region 573724	562 bp proximal
Rr573725	regulatory region 573725	609 bp proximal
Rr573726	regulatory region 573726	1292 bp proximal
Rr573727	regulatory region 573727	1345 bp proximal
Rr573728	regulatory region 573728	1527 bp proximal
Tssr826	transcription start site region 826	327 bp upstream
Tssr827	transcription start site region 827	541 bp upstream
Tssr828	transcription start site region 828	557 bp upstream
Tssr829	transcription start site region 829	647 bp upstream
Tssr830	transcription start site region 830	728 bp upstream
Tssr831	transcription start site region 831	749 bp upstream
Tssr832	transcription start site region 832	838 bp upstream
Tssr28466	transcription start site region 28466	806 bp upstream
Tssr28467	transcription start site region 28467	938 bp upstream
Tssr28468	transcription start site region 28468	1511 bp upstream