rs256679782 SNP Detail

Summary

• ID
  rs256679782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTTGC GGATTGGCCG
  GCGTGAGAAA TGCCTCGTCT AACACCACAA GATTTGAAAT AGCCACGAGA GGATGGATAG
  AGAGATGTCC AACTCCAGGA AGCGTGAAAC CCGGGAACTT CAGAGTTCCA GGTCCCCCGA
  GTTGGCTGGC GGAGGGTGAA GTTCATTTTT TCCGTTTCTC ACCACCCCTT TCCCAGCCTC
  Y
  GGTCTCTAGT CTGAGTAAGA AGGGACCGGC GAGCGGACCC CGCTGACCTC CCCACACCCA
  CACAGCCTAG GTCAGCGTGG TGATGCTCGG TGCTCAGCGT ACCTGTCGCG CAGGTGGCCA
  TAGCGCAGCC CCATGGCAGT GCACTCTGCC TCGCTCACCG ACAACCCCTT GCAGGACTTG
  ATTGGGTAGA TCCAGAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169572	CHEV_1_186634622	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256679782					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	within coordinates
Gm70890	predicted gene, 70890	1181 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425290	regulatory region 425290	444 bp proximal
Rr425291	regulatory region 425291	1192 bp proximal
Rr425292	regulatory region 425292	1605 bp proximal
Rr425293	regulatory region 425293	1753 bp proximal
Tssr15650	transcription start site region 15650	237 bp downstream
Tssr15651	transcription start site region 15651	413 bp downstream
Tssr15652	transcription start site region 15652	427 bp downstream
Tssr15653	transcription start site region 15653	516 bp downstream
Tssr15654	transcription start site region 15654	543 bp downstream
Tssr15655	transcription start site region 15655	561 bp downstream