rs256694406 SNP Detail

Summary

• ID
  rs256694406
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11323868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACCTCTG GTGGGTTTGG
  AAGAATCAGC CTCTTTGGCT TAAAAGCCGT CTCACAGTAA TGACAAATTA GGTTCATTCC
  TCTTTATGAT TAAACTTGTT TTTCAAGGAT CAGGCTATGC TCCACATAAA ACCTGTGACC
  TTAACTACAA ATGGTTTTGT ACTGCCTGTT CCAGGAATGA TAATTATGTC TTTGTTTCAA
  W
  TTTTTTTTTA ACCATCTTGC AACCCTACTT CCGTTTCATA AGGGTTGTCA TGGCTACCTT
  GTTATAACTA CCAGTTTTAT GCTCACCTTG CAACCATGTC TTTGTTTCAG GATGCCCTTA
  GGAAAAGCTT GCTATGATGT TCTGCTCCTG TAACCCCACC TATTTTGCTT GCTAAATCCC
  CCATTTGAAA AACCCCTACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss360594923	MGP_WTSI_4_11251015	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs256694406					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360594923	MGP_WTSI_4_11251015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11323868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14033	CpG island 14033	1362 bp distal
Dpy19l4	dpy-19 like 4	1731 bp upstream
Gm26663	predicted gene, 26663	within coordinates
Rr588912	regulatory region 588912	1893 bp distal
Rr588913	regulatory region 588913	1241 bp distal
Rr588914	regulatory region 588914	1709 bp distal
Rr588915	regulatory region 588915	1590 bp distal
Tssr36477	transcription start site region 36477	1955 bp downstream
Tssr36478	transcription start site region 36478	1931 bp downstream
Tssr36479	transcription start site region 36479	1620 bp downstream
Tssr40926	transcription start site region 40926	1779 bp upstream
Tssr40927	transcription start site region 40927	1722 bp upstream