TCATAACTTG GAATAACCTC CAAATTTCCA TATCACAACG TGTAAGATGC TACTTAACTG GCTGCTGACC CTCTGTCTGA TGGCTCCCTG ACACAGTTGG CCTGTCAGTC ACACATGCCT TCCCTCATGT TCCTGCACAT GGCTGTCATT CACACTATCT AGGATTTACT CTTCCACTGC CAGGGCTGCT CCTTCCTATT R TCATCAATGA ACTCGGTCCT TCCCATCACT TATCTCTGGT CAAGTATTTC TCTTACCTCC AGGCCATCAC TGTTTTGATA CCATTCTCAT CCGTTCCTTT ATAAGTACCG AATCCTCTGT CCATCATAAC AGGCCTGCCA TCTTGAAGAC GAGACTGTAG TTGAGACATT AAGCAAAAAT ACATAGATTG TGTGGTAGTG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss388517819 | MGP_WTSI_13_47202877 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs256708439 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss388517819 | MGP_WTSI_13_47202877 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr13:47260985 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
1700026N04Rik | RIKEN cDNA 1700026N04 gene | within coordinates | ||||||
Cpgi5551 | CpG island 5551 | 649 bp distal | ||||||
Dek | DEK proto-oncogene | 1308 bp upstream | ||||||
Rr479039 | regulatory region 479039 | 1073 bp distal | ||||||
Rr479040 | regulatory region 479040 | 451 bp distal | ||||||
Rr479041 | regulatory region 479041 | 1240 bp proximal | ||||||
Tssr119626 | transcription start site region 119626 | 1917 bp downstream | ||||||
Tssr119627 | transcription start site region 119627 | 1098 bp downstream | ||||||
Tssr119628 | transcription start site region 119628 | 1079 bp downstream | ||||||
Tssr122370 | transcription start site region 122370 | 1985 bp upstream | ||||||
Tssr122371 | transcription start site region 122371 | 1887 bp upstream | ||||||
Tssr122372 | transcription start site region 122372 | 1807 bp upstream | ||||||
Tssr122373 | transcription start site region 122373 | 1762 bp upstream | ||||||
Tssr122374 | transcription start site region 122374 | 1634 bp upstream | ||||||
Tssr122375 | transcription start site region 122375 | 1399 bp upstream | ||||||
Tssr122376 | transcription start site region 122376 | 1381 bp upstream | ||||||
Tssr122377 | transcription start site region 122377 | 1338 bp upstream | ||||||
Tssr122378 | transcription start site region 122378 | 1303 bp upstream | ||||||
Tssr122379 | transcription start site region 122379 | 1288 bp upstream | ||||||
Tssr122380 | transcription start site region 122380 | 1276 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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