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rs256717046 SNP Detail
Summary
  • ID
    rs256717046
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:43114796 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCTTTAACA GTCCAACCCC
    TTTTTTTTGT CCCCAACCCC ACACCCAAGA CGGCCCGGAC GCTCCTGTCA TTAGGGTCTC
    CTCGGACCGG GATGCCAGTC CTGCGCTCTA CGTCACTGCG GGCAGCAATG TGACCTTGCA
    TTGCTCGGCC CCCTCGCGGC CGCCCGCGGA CATCGCGTGG AGTCTGGCAG ACCCCACAGA
    R
    GCCGCAGTGC CTGCGGGGCC TCGCCTCCTG CTGCCCGCTG TGGGGCCAGG CCATGGCGGC
    GCTTACGCCT GCATCGCCGC GAACCCTCGC ACTGGCCACC GCCGGCGTTC AGTGTTCAAC
    CTCACTGTGG CGGGTAAGAG CAGTAGGGGC CGTCCAGCAG CAGAAGAGGG GAAGCACATG
    GAGTCCTGGG TGTCAGCAAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371132472 MGP_WTSI_7_50720742 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256717046 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss371132472 MGP_WTSI_7_50720742 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:43114796 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi18932 CpG island 18932 within coordinates
Cpgi18933 CpG island 18933 790 bp proximal
Etfbl electron transferring flavoprotein, beta polypeptide like 1785 bp downstream
Gm39000 predicted gene, 39000 within coordinates
Rr400282 regulatory region 400282 358 bp upstream
Rr645966 regulatory region 645966 508 bp distal
Rr645967 regulatory region 645967 136 bp proximal
Rr645968 regulatory region 645968 198 bp proximal
Rr645969 regulatory region 645969 206 bp proximal
Rr645970 regulatory region 645970 898 bp proximal
Rr645971 regulatory region 645971 1205 bp proximal
Tssr66010 transcription start site region 66010 636 bp upstream
Tssr72134 transcription start site region 72134 1120 bp upstream
Tssr72135 transcription start site region 72135 191 bp downstream
Vsig10l V-set and immunoglobulin domain containing 10 like Coding-Synonymous
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory