rs256721313 SNP Detail

Summary

• ID
  rs256721313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25592724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCCCTGA CCCAGCTTGC
  CTGGCCCTTC TTGGAGCACG GAGAGAAGTG GGAAAGAGAA GCTGGATTCG ATAGGTTCAG
  CCTAGGGTGA CCAGACAGAA CTCCAGCGCC CTCGCCCTTC AGTCACACAG CAACCCGTAG
  GTATCAATCC GGTGCTGGGG CCGATGAGGA AACCGAGACT CCAAGACATT AGGTAACTTG
  Y
  TCTGGGTCCC CAGTCAGTAG AGGGCAGGTC TGTCCGGTCT AACGCAGGCC TCCCTCGTGG
  AGACATTGAC ATTTAAATAT AAGTAACGCC AGGCAGACAA AGTGGACTCA ATTTTACGGT
  AAAATTGTCA GCCCAGGGAC CGAGCACCGA GAGATGCGGC TTTGGGGGCT GGGGGCGGGG
  AGGAGGATGC TGATGTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373995059	MGP_WTSI_8_26213180	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256721313					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373995059	MGP_WTSI_8_26213180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25592724 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Cpgi20179	CpG island 20179	within coordinates
Gm45745	predicted gene 45745	781 bp downstream
Gm63713	predicted gene, 63713	759 bp downstream
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	332 bp upstream
Rr368503	regulatory region 368503	310 bp upstream
Tssr2524	transcription start site region 2524	1081 bp downstream
Tssr76668	transcription start site region 76668	1604 bp downstream
Tssr76669	transcription start site region 76669	822 bp downstream
Tssr76670	transcription start site region 76670	755 bp downstream
Tssr76671	transcription start site region 76671	777 bp upstream
Tssr80677	transcription start site region 80677	1100 bp upstream
Tssr80678	transcription start site region 80678	995 bp upstream
Tssr80679	transcription start site region 80679	916 bp upstream
Tssr80680	transcription start site region 80680	539 bp upstream
Tssr80681	transcription start site region 80681	514 bp upstream
Tssr80682	transcription start site region 80682	320 bp upstream
Tssr80683	transcription start site region 80683	138 bp upstream
Tssr80684	transcription start site region 80684	306 bp downstream
Tssr80685	transcription start site region 80685	1953 bp downstream
Tssr80686	transcription start site region 80686	1992 bp downstream