rs256721319 SNP Detail

Summary

• ID
  rs256721319
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112687028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGAGCTTG ACCCCTCCTC
  CCCTTCCAGG AAGCAGCAGC CCACTCCAAC CCTGCCCTCA TGTCTAAGGA TACCGACCCC
  ATGACAGTGC ACAGCTGGCA GGGGCCTCAG TCAGAACCCA GGACACCATT CCTTCATCTC
  CCGTCCTTCA CCTTGGAAGG AGCCACAACC CAGGTAAAAG TCTCAAATAG AAAAAAAAAA
  W
  AATAACGTTT ATAAGCATCC ATTACTAAGG AGTGAGCAAG GGGTAGCTAA GCTAAGACAG
  CGAAGCCGCT GGGGAAAGGG CTGTTTACAG AGCCAAGAGA ATGGGAGAGC CCGGCTCGGG
  AGTTGGGACT CAGAAACAGG ACAGTCTCAG TCTACTAGGA AGAAACTGCA AAATCCCCAT
  ACAGCTCCCG GAAGCTGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ
ss387391304	MGP_WTSI_12_113958805	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ
rs256721319					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387391304	MGP_WTSI_12_113958805	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112687028 () rs orientation: forward

Symbol	Name	Function Class
Cep170b	centrosomal protein 170B	922 bp upstream
Cpgi5179	CpG island 5179	666 bp proximal
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	46 bp proximal
Rr473584	regulatory region 473584	1099 bp proximal
Rr473585	regulatory region 473585	1433 bp proximal
Rr473586	regulatory region 473586	1611 bp proximal
Tssr115398	transcription start site region 115398	1338 bp downstream
Tssr115399	transcription start site region 115399	511 bp upstream
Tssr115400	transcription start site region 115400	910 bp upstream
Tssr115401	transcription start site region 115401	1235 bp upstream
Tssr115402	transcription start site region 115402	1569 bp upstream
Tssr115403	transcription start site region 115403	1916 bp upstream
Tssr117886	transcription start site region 117886	1098 bp downstream
Tssr117887	transcription start site region 117887	1136 bp downstream
Tssr117888	transcription start site region 117888	1166 bp downstream