rs256727578 SNP Detail

Summary

• ID
  rs256727578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135504593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGGATGT AGTGGGTGCG
  TGCTTATAAA CCCAGGCGGA GCAAGTTATT GAACTTGCTC AGCTACATGA GACCCAGGTC
  TTGAAAAACG AGGGCAGGAG GTGAGGGAGA CGAGAGGGGA AGAAGGGAGG GGAAGGGGAA
  GGAGAGGGGA AGAAGAGAGG AGAGCAAAGA GAGGAGAGGA GAGGGGAGGG GAGGGGAGGG
  R
  AGGGGAGGGG AGAGGAGGGG AGGGGAGGGG TTCTAGTTCT GGGGCTGTGC TGTGGGTGGT
  CTGGTTCATG CTTTGTGGGG TGGTGGTTGG CGTTTAGCCG GACACACATG CTCCAGCTAA
  GGCTGAGGAA GACTAATCCC TGATAAAGAC AGAACACTGC ACCTTAGGCA GTGGACCTCA
  TCAGAACAGT ACCTAATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
ss351544860	MGP_WTSI_1_137473432	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SWR/J
rs256727578					SNP	A	A	A	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351544860	MGP_WTSI_1_137473432	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135504593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419193	regulatory region 419193			1985 bp distal
Rr419194	regulatory region 419194			1199 bp distal
Rr419195	regulatory region 419195			990 bp proximal
Rr419196	regulatory region 419196			1986 bp proximal