rs256744596 SNP Detail

Summary

• ID
  rs256744596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125871590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCTCGGG GACCAAGCAG
  CTGGACCAGG TGACCCTCTG TGACTCCCCC GAGCCCTCTC TAACCTCGTT CTGGCCCCCT
  CCTGGGCTCT GACCTAGAAA AAGAAGCTTA TGCCAATGAC CGGCGGGCCT TAGGACCCCG
  CGTGGCCGGA AAGCGGGCGG GGCATCGTGC GGCTCCCGCG GCGGTGGGGA GGTCCAGGCC
  Y
  GTGGCGCCTG GCGGGAGGGC GCGGCGGGAG TGCGCGTGCG CGGAGCGCGC ACCCGGCGCG
  GCGGACAAAG GCGCGTGCGG CGGCGCGCGA GGCGGAGGGC GGAGCGGCGG GCGGGCAGGT
  ACGCGCCGGC GGGAGGCGGA GCCGCGAGGC CGCGATGGAG CGCAGCCCGG GCGGGCACCG
  GCGCTGGAGC CCGAGTGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss373065200	MGP_WTSI_7_133415932	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256744596					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373065200	MGP_WTSI_7_133415932	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125871590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	within coordinates
Rr368426	regulatory region 368426	517 bp downstream
Rr381444	regulatory region 381444	1368 bp downstream
Rr655453	regulatory region 655453	within coordinates
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	within coordinates
Tssr69003	transcription start site region 69003	10 bp upstream
Tssr69004	transcription start site region 69004	26 bp upstream
Tssr69005	transcription start site region 69005	45 bp upstream
Tssr69006	transcription start site region 69006	57 bp upstream
Tssr69007	transcription start site region 69007	88 bp upstream
Tssr69008	transcription start site region 69008	108 bp upstream
Tssr69009	transcription start site region 69009	171 bp upstream
Tssr69010	transcription start site region 69010	366 bp upstream
Tssr69011	transcription start site region 69011	429 bp upstream