rs256753661 SNP Detail

Summary

• ID
  rs256753661
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106524114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAATCCC AGCGACTCTT
  AGGTTAGGGG ATGGTATCAG TCCTGACATC TGCCCCCCAC CCCCCATGAC TGACACCTGG
  CACCACCCAT GACTGACACC TGCCCCCATC CCATGACTGA CACCTGCCCC CTCCCATGAC
  TGACACCTGT CTCCCCTTCC ATGACTGACA CCTGCCCCAA CCCCCATGAC TGGCACCTGG
  T
  ACTACCCAAG ACTGACACTT GGCACCACCC ATGATGGACA CTTGGCACCC CCCAACCCCA
  AGCTAGTTCC CACCTCCCTG GACATTTCTC CAAGTTTTCT TTCTCCCATA AACCTTTCTC
  TGGGGTCCAT TTGACTTCTT GGAGCTTTAG AGTTAACCGT AGATAAAATG AGATAGATAG
  CAGGAAAGAC CAGGTCTGGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss378834632	MGP_WTSI_9_106549246	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs256753661					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378834632	MGP_WTSI_9_106549246	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106524114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22271	CpG island 22271	180 bp proximal
Grm2	glutamate receptor, metabotropic 2	within coordinates
Rr686376	regulatory region 686376	599 bp distal