rs256757254 SNP Detail

Summary

• ID
  rs256757254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46385977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGACGAAG TAATTTGCAG
  AAGGGGGAGG AAGAAAACGG TTTAAGTACT GGGGAACCAG GAGCTTCCTG GTGCTGTGGA
  AGGAGTTAGG ACAGAAGTTG GGAATGGGGA CAAAGGGTTA ATGGATCCCT TGAGTAGTGA
  GGGGTTAACC CGGATTAGGA CAACCGAGAA CTGGGGGTGT ATACAGAAGC GGAGGGGGGA
  Y
  TGTAAGAGCG AACTGTAAAC GTGGAGAAAG GAGGGGGCGC CTGTGGTGGG TCATTAGTGG
  GCTTGGGGGA GCCAGGGGGC GGCTGGGGTG GGATGGGGGG GGGAGTGAGG CGGGGCCTGG
  AGAGCATTTG AGAGGGCTTT GGAGGGCACA AGACCGCGTA GTCTAGGGCG GTCCGGGAAC
  CAGGACGCCC CTGTGGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402595877	MGP_WTSI_19_46472028	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256757254					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402595877	MGP_WTSI_19_46472028	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46385977 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	1797 bp upstream
Cpgi11001	CpG island 11001	1636 bp distal
Cpgi11002	CpG island 11002	113 bp distal
Gm59146	predicted gene, 59146	1381 bp downstream
Rr406000	regulatory region 406000	1554 bp downstream
Rr406001	regulatory region 406001	611 bp downstream
Rr548728	regulatory region 548728	1811 bp distal
Rr548729	regulatory region 548729	1301 bp distal
Rr548730	regulatory region 548730	502 bp distal
Rr548731	regulatory region 548731	776 bp distal
Rr548732	regulatory region 548732	668 bp distal
Rr548733	regulatory region 548733	23 bp proximal
Rr548734	regulatory region 548734	65 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	within coordinates
Tssr156753	transcription start site region 156753	539 bp downstream
Tssr156754	transcription start site region 156754	505 bp downstream
Tssr159650	transcription start site region 159650	1782 bp upstream