rs256762364 SNP Detail

Summary

• ID
  rs256762364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127484280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTTTCT CCTTCTCCTC
  CTCCCCCTTC CTCCCTCCTT CCTCCCTCCC TCTCCCTCCT CCTTCTTCTC TAGACTATTT
  TTCATATTTT TGTTTGTTTG TTTTGATTTC TGTTGCTGTT GTTTTGAGTC ACGATTTTAC
  TAAGTAGCCC TGGCTGGCCT GGATCTCTGC ATATATACCA GGCTGGCTTC AAACTCAGAG
  R
  TCTGTTTGTC TCTGCCTCCT GAGTGTTGAG ATGAAAGGTG TATATATCAC TATACCTGTG
  AAAGATTTAT TTCTAATTAT GTTGAATGTT TGTGTATGTT TGGGGAGGGG ATGGGAGTGG
  GCAGGGTATA TGCATGTGAG GGCAGGTGCC CACAAAAGCC AGAAGGGGCA TCAGATACCC
  TGGAGCTAGA GTTATAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956108	CHEV_3_127393549	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256762364					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127484280 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	1304 bp downstream
Tssr35587	transcription start site region 35587	117 bp downstream
Tssr35588	transcription start site region 35588	660 bp downstream
Tssr35589	transcription start site region 35589	1915 bp downstream