rs256779329 SNP Detail

Summary

• ID
  rs256779329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3284222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCAGGA GGTGAGTTAC
  CTCAATCTGT AAGGCAGAGT GAGACTGTGT GTCAAAACAT TCCACTATTG AAAAAGGTCC
  CTAGCCCCTG GTCTTAGCCC CTGGTCTTGA AGTCTCATAT TGGGGCTTAA ATGTCATCAG
  TGGGGTGTCT TCTAGCGTAG GGAGAAGAAA ATAAATCATT ACAGAAGAAA ACCCATTTGC
  Y
  ACTCCTTACA AGATATGAAA GTATAAGAGA CTGCTTGGGA AGCAAGGACA AACTTGCAGC
  CCCATGGGAC AAGTCTGTCA TAATCAGTGA CATGAATCAA AACCATTGTT ACAACACTGA
  GTGTTCTCAG ACAAAATCCG GGTATGAGTT CCAGCCCCAA GGACCAGCGC TATTTCTCTG
  CCAGGAGAAG CCTTCCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382239577	MGP_WTSI_11_3234225	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256779329					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382239577	MGP_WTSI_11_3234225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3284222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	1502 bp distal
Gm74265	predicted gene, 74265	within coordinates
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	within coordinates
Rr402384	regulatory region 402384	1666 bp downstream
Rr402385	regulatory region 402385	1624 bp upstream
Rr441529	regulatory region 441529	1903 bp distal
Rr441530	regulatory region 441530	475 bp proximal
Rr441531	regulatory region 441531	1215 bp proximal
Tssr3406	transcription start site region 3406	1734 bp downstream
Tssr100049	transcription start site region 100049	1762 bp downstream
Tssr100050	transcription start site region 100050	1738 bp downstream
Tssr100051	transcription start site region 100051	1711 bp downstream
Tssr106460	transcription start site region 106460	1946 bp upstream
Tssr106461	transcription start site region 106461	1921 bp upstream
Tssr106462	transcription start site region 106462	26 bp downstream
Tssr106463	transcription start site region 106463	1590 bp downstream