rs256795489 SNP Detail

Summary

• ID
  rs256795489
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5821550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCGGCCGC Ccgagccggg gcggggcggg
  gcgagggcgg agccagtctg gtctatgggc ggggtttgag ttggggcgga gctttagggt
  ggggccttgc gggagtgagg ctggacTGAA GGCAGACCTC CCTGGGCAGG GCGGAGCGTG
  W
  CCGGAAGGGT GAGCCAAGAT GGTCATCTGA ATGCTCCCAA CTTGTGGCCT TGTATAGATA
  GAAAAATTGA GTGTGATAGA GAGTAGTGAG TGCAACCGTT GTAGAATGAA GAGGGGAGGG
  GTTCAGGAAG TGAGCGTGAC AATAGGGCCT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717451	CHEV_19_5771522	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256795489					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5821550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10479	CpG island 10479	within coordinates
Gm59602	predicted gene, 59602	within coordinates
Gm59603	predicted gene, 59603	within coordinates
Rr363624	regulatory region 363624	within coordinates
Rr405811	regulatory region 405811	within coordinates
Scyl1	SCY1-like 1 (S. cerevisiae)	89 bp upstream
Tssr157640	transcription start site region 157640	221 bp upstream
Tssr157641	transcription start site region 157641	151 bp upstream
Tssr157642	transcription start site region 157642	114 bp upstream
Tssr157643	transcription start site region 157643	99 bp upstream
Tssr157644	transcription start site region 157644	96 bp downstream