rs256799338 SNP Detail

Summary

• ID
  rs256799338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13428268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGTGTT GATATATAGT
  TTGTACTTTA CAATTGGAGA ACAGAAATTA TCTGCTGTAT ATTTTACAGC AACATGCTGT
  TTTCGGTTTA CCTTTAAACA CCACCTCAAA GAGCAGACTT AAGATAATGG CCCTAGAATA
  TTTCGAAACT CGTGTGAAAG GTTGAAAGCA GAGTTGACAA ACAGAATGAA AATCTAACAG
  R
  AAAGCAAAAG AAGAAAATTG GAAGGCAAAT GTATCTATCT ATACGAGAAT AGTGCTTTGA
  AAAGAAACTT CATTGGGGTA GACTCTTGAA GGCCCATGGG GAGAAAAAGG ACGGGGGCAG
  AGTGAGGGGC AAAGGGCACA GAGATCCAGA TAAAAGAACT TTAGAGGTTC TTCTTTGACG
  GTTGAGCCAA TCCCTTCGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379486957	MGP_WTSI_10_13272330	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256799338					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379486957	MGP_WTSI_10_13272330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13428268 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	383 bp upstream
Cpgi1315	CpG island 1315	327 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	415 bp upstream
Rr427802	regulatory region 427802	43 bp proximal
Rr427803	regulatory region 427803	304 bp proximal
Rr427804	regulatory region 427804	381 bp proximal
Rr427805	regulatory region 427805	586 bp proximal
Rr427806	regulatory region 427806	1868 bp proximal
Tssr92399	transcription start site region 92399	663 bp upstream
Tssr92400	transcription start site region 92400	721 bp upstream
Tssr96771	transcription start site region 96771	331 bp downstream
Tssr96772	transcription start site region 96772	475 bp downstream
Tssr96773	transcription start site region 96773	539 bp downstream
Tssr96774	transcription start site region 96774	587 bp downstream
Tssr96775	transcription start site region 96775	616 bp downstream
Tssr96776	transcription start site region 96776	631 bp downstream