rs256803896 SNP Detail

Summary

• ID
  rs256803896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86250386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGGGAA TCTCTGAGTT
  TGAAGCCATT CTGGTCCACA AAGGAAGCTC CATGCTAGCC TAGGCTACAT AGTAACACCC
  TGTCTCAAGA AGAAAAGAAG AGACAACAGT TAGGAGCTAT CAGAACTTTA AGTCACAATT
  ATCTCTGTAA AATAGTAGAC TCTTCTAGCT TACTTTTTTA GCCATAAAAT GAAAAGTATT
  Y
  TTCACCACCT CTTTGTCCAC CTTAGTGCTG ATTAAGGTCC TCAAGCCAAA AACTTGCAGA
  GAAAGTTCTG CTGCTTGCCA GTGGACCTTA GATCAAATCT GACCCTAAAT CAAATTAGTT
  TATCATAAAT CAAGGATAAT CAGAGTAGTT TTCTCCTAAA GTGTTTGATG AAATAATGTT
  GATCATAAGT ACTGGTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384126903	MGP_WTSI_11_86173062	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256803896					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384126903	MGP_WTSI_11_86173062	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86250386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3473	CpG island 3473	1015 bp distal
Gm38937	predicted gene, 38937	425 bp downstream
Gm74255	predicted gene, 74255	1268 bp upstream
Med13	mediator complex subunit 13	1964 bp upstream
Rr402823	regulatory region 402823	1079 bp downstream
Rr453539	regulatory region 453539	1969 bp distal
Rr453540	regulatory region 453540	1468 bp distal
Rr453541	regulatory region 453541	792 bp distal
Rr453542	regulatory region 453542	1094 bp distal
Tssr109841	transcription start site region 109841	1946 bp upstream
Tssr109842	transcription start site region 109842	1638 bp upstream
Tssr109843	transcription start site region 109843	1388 bp upstream
Tssr109844	transcription start site region 109844	1366 bp upstream
Tssr109845	transcription start site region 109845	1333 bp upstream
Tssr109846	transcription start site region 109846	1301 bp upstream
Tssr109847	transcription start site region 109847	1238 bp upstream