rs256822307 SNP Detail

Summary

• ID
  rs256822307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32736656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTTATA AGCATAGTCA
  TCGTCAGCAT GGACGGTGCA CATTTGAGGG TAGAAGTAGT TTTGTGTGTT TAAACCGACG
  TAATTACAAA TTTGGAGCCT GCATTTGGAA GTTTTGTAGT TTAAAATCAA TAGTGCCAGA
  ATATATATCA TTGGAGCTTT TAATAGAACT TTGTTAAATT AGACTTTCTT TCCTGATGAG
  R
  TGTGGGATAG GATATGAAAT TTGCATTTCA GTGGTATGTT CCATTCATTT GACCTCGCCA
  CACTTGATAG AATGGAGATC GAATAGTTTT TGATCCCAGA TGATGATGTC TGTGAGTCCA
  GGGATGCTTG CTGTGTGTGG CAAATGACTG CAGAGGTTAA ACTCAGTTCT CACATGAAAT
  TTAAGTAGTA GCGTGAATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402294767	MGP_WTSI_19_32833746	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256822307					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402294767	MGP_WTSI_19_32833746	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32736656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	746 bp distal
Gm36566	predicted gene, 36566	1844 bp upstream
Gm56643	predicted gene, 56643	1843 bp upstream
Gm58496	predicted gene, 58496	1596 bp downstream
Gm58497	predicted gene, 58497	1415 bp downstream
Pten	phosphatase and tensin homolog	within coordinates
Rr546565	regulatory region 546565	1542 bp distal
Rr546566	regulatory region 546566	1227 bp proximal
Tssr5485	transcription start site region 5485	1756 bp downstream
Tssr5486	transcription start site region 5486	1561 bp downstream
Tssr5487	transcription start site region 5487	1521 bp downstream
Tssr155992	transcription start site region 155992	1669 bp downstream
Tssr155993	transcription start site region 155993	1619 bp downstream
Tssr155994	transcription start site region 155994	1597 bp downstream
Tssr155995	transcription start site region 155995	845 bp downstream
Tssr158899	transcription start site region 158899	1918 bp upstream
Tssr158900	transcription start site region 158900	1873 bp upstream