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rs256837451 SNP Detail
Summary
  • ID
    rs256837451
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128351 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCTCCTGCT GCTCGATCTT
CTCCTCTATC TTGTCATTCT CTTCACTGTC AACTATCTCT TACGTTTCTC TCCATCTCCC
TTTTCCCTGC CACTCTTCCT CTTCCATCTC TTCCTGTTTC CTATTCTTTA TATCCTAATC
CTCCATATCT TCTCTTGTAT CTCCTCTTTG TTCATCTCCT CCATATCTTC CCCATTCTCT
W
TTTCCTCCTC CATAATCTTT TTTCTCCTAT CTTCTCCTAC TTCCTTTCTT TTCCTCTCAT
TTGCTCTTCC ATCTCCTCCC CTATTTTCAA CTCCTCTTTC TCTTCCCATC CTTCTACGAT
ACACCTATCC CCCCTCCACC TGTCATCAAC CTCCTCCACA TCTCCCCTCT CCCTCCATCT
TTCTCCTCCT TCGTCTCTTC                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156107 MGP_WTSI_7_51734297 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256837451 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156107 MGP_WTSI_7_51734297 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128351 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1548 bp downstream
Tssr2225 transcription start site region 2225 1508 bp downstream
Tssr2226 transcription start site region 2226 982 bp downstream
Tssr2227 transcription start site region 2227 84 bp upstream
Tssr2228 transcription start site region 2228 1151 bp upstream
Tssr2229 transcription start site region 2229 1427 bp upstream
Tssr2230 transcription start site region 2230 1606 bp upstream
Tssr2231 transcription start site region 2231 1739 bp upstream
Tssr2232 transcription start site region 2232 1914 bp upstream
Tssr2233 transcription start site region 2233 1947 bp upstream
Tssr66231 transcription start site region 66231 1969 bp downstream
Tssr66232 transcription start site region 66232 1957 bp downstream
Tssr66233 transcription start site region 66233 1935 bp downstream
Tssr66234 transcription start site region 66234 1905 bp downstream
Tssr66235 transcription start site region 66235 1885 bp downstream
Tssr66236 transcription start site region 66236 1858 bp downstream
Tssr66237 transcription start site region 66237 1837 bp downstream
Tssr66238 transcription start site region 66238 1818 bp downstream
Tssr66239 transcription start site region 66239 1767 bp downstream
Tssr66240 transcription start site region 66240 1686 bp downstream
Tssr66241 transcription start site region 66241 1674 bp downstream
Tssr66242 transcription start site region 66242 1594 bp downstream
Tssr66243 transcription start site region 66243 1580 bp downstream
Tssr66244 transcription start site region 66244 1529 bp downstream
Tssr66245 transcription start site region 66245 1467 bp downstream
Tssr66246 transcription start site region 66246 1439 bp downstream
Tssr66247 transcription start site region 66247 1392 bp downstream
Tssr66248 transcription start site region 66248 1351 bp downstream
Tssr66249 transcription start site region 66249 1328 bp downstream
Tssr66250 transcription start site region 66250 1309 bp downstream
Tssr66251 transcription start site region 66251 1284 bp downstream
Tssr66252 transcription start site region 66252 1253 bp downstream
Tssr66253 transcription start site region 66253 1225 bp downstream
Tssr66254 transcription start site region 66254 1177 bp downstream
Tssr66255 transcription start site region 66255 1150 bp downstream
Tssr66256 transcription start site region 66256 1101 bp downstream
Tssr66257 transcription start site region 66257 1090 bp downstream
Tssr66258 transcription start site region 66258 1047 bp downstream
Tssr66259 transcription start site region 66259 1011 bp downstream
Tssr66260 transcription start site region 66260 904 bp downstream
Tssr66261 transcription start site region 66261 883 bp downstream
Tssr66262 transcription start site region 66262 876 bp downstream
Tssr66263 transcription start site region 66263 864 bp downstream
Tssr66264 transcription start site region 66264 840 bp downstream
Tssr66265 transcription start site region 66265 797 bp downstream
Tssr66266 transcription start site region 66266 780 bp downstream
Tssr66267 transcription start site region 66267 743 bp downstream
Tssr66268 transcription start site region 66268 727 bp downstream
Tssr66269 transcription start site region 66269 691 bp downstream
Tssr66270 transcription start site region 66270 656 bp downstream
Tssr66271 transcription start site region 66271 624 bp downstream
Tssr66272 transcription start site region 66272 572 bp downstream
Tssr66273 transcription start site region 66273 554 bp downstream
Tssr66274 transcription start site region 66274 549 bp downstream
Tssr66275 transcription start site region 66275 529 bp downstream
Tssr66276 transcription start site region 66276 509 bp downstream
Tssr66277 transcription start site region 66277 489 bp downstream
Tssr66278 transcription start site region 66278 445 bp downstream
Tssr66279 transcription start site region 66279 400 bp downstream
Tssr66280 transcription start site region 66280 378 bp downstream
Tssr66281 transcription start site region 66281 338 bp downstream
Tssr66282 transcription start site region 66282 321 bp downstream
Tssr66283 transcription start site region 66283 307 bp downstream
Tssr66284 transcription start site region 66284 295 bp downstream
Tssr66285 transcription start site region 66285 281 bp downstream
Tssr66286 transcription start site region 66286 242 bp downstream
Tssr66287 transcription start site region 66287 206 bp downstream
Tssr66288 transcription start site region 66288 181 bp downstream
Tssr66289 transcription start site region 66289 99 bp downstream
Tssr66290 transcription start site region 66290 61 bp downstream
Tssr66291 transcription start site region 66291 35 bp downstream
Tssr66292 transcription start site region 66292 3 bp downstream
Tssr66293 transcription start site region 66293 within coordinates
Tssr66294 transcription start site region 66294 20 bp upstream
Tssr66295 transcription start site region 66295 305 bp upstream
Tssr66296 transcription start site region 66296 438 bp upstream
Tssr66297 transcription start site region 66297 481 bp upstream
Tssr66298 transcription start site region 66298 506 bp upstream
Tssr66299 transcription start site region 66299 575 bp upstream
Tssr66300 transcription start site region 66300 582 bp upstream
Tssr66301 transcription start site region 66301 606 bp upstream
Tssr66302 transcription start site region 66302 620 bp upstream
Tssr66303 transcription start site region 66303 661 bp upstream
Tssr66304 transcription start site region 66304 669 bp upstream
Tssr66305 transcription start site region 66305 679 bp upstream
Tssr66306 transcription start site region 66306 713 bp upstream
Tssr66307 transcription start site region 66307 770 bp upstream
Tssr66308 transcription start site region 66308 823 bp upstream
Tssr66309 transcription start site region 66309 844 bp upstream
Tssr66310 transcription start site region 66310 882 bp upstream
Tssr66311 transcription start site region 66311 959 bp upstream
Tssr66312 transcription start site region 66312 975 bp upstream
Tssr66313 transcription start site region 66313 996 bp upstream
Tssr66314 transcription start site region 66314 1004 bp upstream
Tssr66315 transcription start site region 66315 1024 bp upstream
Tssr66316 transcription start site region 66316 1083 bp upstream
Tssr66317 transcription start site region 66317 1095 bp upstream
Tssr66318 transcription start site region 66318 1140 bp upstream
Tssr66319 transcription start site region 66319 1163 bp upstream
Tssr66320 transcription start site region 66320 1190 bp upstream
Tssr66321 transcription start site region 66321 1208 bp upstream
Tssr66322 transcription start site region 66322 1228 bp upstream
Tssr66323 transcription start site region 66323 1274 bp upstream
Tssr66324 transcription start site region 66324 1303 bp upstream
Tssr66325 transcription start site region 66325 1333 bp upstream
Tssr66326 transcription start site region 66326 1374 bp upstream
Tssr66327 transcription start site region 66327 1388 bp upstream
Tssr66328 transcription start site region 66328 1404 bp upstream
Tssr66329 transcription start site region 66329 1443 bp upstream
Tssr66330 transcription start site region 66330 1462 bp upstream
Tssr66331 transcription start site region 66331 1476 bp upstream
Tssr66332 transcription start site region 66332 1497 bp upstream
Tssr66333 transcription start site region 66333 1545 bp upstream
Tssr66334 transcription start site region 66334 1557 bp upstream
Tssr66335 transcription start site region 66335 1566 bp upstream
Tssr66336 transcription start site region 66336 1575 bp upstream
Tssr66337 transcription start site region 66337 1593 bp upstream
Tssr66338 transcription start site region 66338 1649 bp upstream
Tssr66339 transcription start site region 66339 1700 bp upstream
Tssr66340 transcription start site region 66340 1745 bp upstream
Tssr66341 transcription start site region 66341 1790 bp upstream
Tssr66342 transcription start site region 66342 1852 bp upstream
Tssr66343 transcription start site region 66343 1884 bp upstream
Tssr72199 transcription start site region 72199 1444 bp upstream
Tssr72200 transcription start site region 72200 486 bp upstream
Tssr72201 transcription start site region 72201 3 bp downstream
Tssr72202 transcription start site region 72202 866 bp downstream
Tssr72203 transcription start site region 72203 1252 bp downstream
Tssr72204 transcription start site region 72204 1848 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory