rs256838795 SNP Detail

Summary

• ID
  rs256838795
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65756534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACAGTT GGCAGCCTGG
  TCATACCCCT CACTGCTTGT GCAGATGGGC CCTGGCAGCT TGCAGCCCAG TGCAGGCCCG
  GGAGCCACAG AAGCAGGCCT TCCCGACATT GCCATCCTGG GGGTGGTATC TGGATCTTCG
  GCCTATTTTC TTTGAGTTTT TGAATTTTAT CCTGGCATTG GATCACCTTC CAGAACGGCA
  S
  AGGCATGGGA TCAAGTTAAG CGCAGGTTTC CCTGTCTGTG AGATGACCCA CTATAGATGT
  TGGTTGTTCA TTGGAGAGAT GTAGAAGACA GGAAACCAGA GCGCTCCAAA TCTTAAGTTA
  TAACTTTAGA ACATGGTGGC TTGAGCTATT GTGGGTTAGC AGACTTGAAA TAGAGGAGTC
  AGGGCAGAGA CATCTAGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809800	CHEV_6_65729544	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256838795					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65756534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	79 bp distal
Gm16838	predicted gene, 16838	301 bp upstream
Prdm5	PR domain containing 5	within coordinates
Rr631490	regulatory region 631490	439 bp distal
Rr631491	regulatory region 631491	within coordinates
Tssr56854	transcription start site region 56854	488 bp downstream
Tssr61222	transcription start site region 61222	86 bp downstream
Tssr61223	transcription start site region 61223	139 bp downstream
Tssr61224	transcription start site region 61224	147 bp downstream
Tssr61225	transcription start site region 61225	164 bp downstream
Tssr61226	transcription start site region 61226	223 bp downstream