rs256841628 SNP Detail

Summary

• ID
  rs256841628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129009037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCCTAGTC CTCCAAAGCC TCATGGAAAT
  CTGAGGTTTG GGGTGGGGTG GGGGTGTCTG TAAAACACGC GCATGTTCGT GTCTTAAAAG
  GATGTGTTTC TTCTCAACGG TGTATACTTT TGAGCAAAGG CTATAAAAAA ATGAATGTAC
  Y
  GCCTCAGTGA GATAAACGTG TAAATAAAAC GTGCGGCGCT GGGGGAGGGG AAGAAATGGG
  GCGCACACAC CCACACTTTC ACCGCTCACC CCCAGACACA GCGCTCCCTA AGGAACGGAG
  GTGCCGAGCA CAGACCTTTC CCCGGCCAGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320961718	CHEV_3_128918306	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256841628					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129009037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13808	CpG island 13808	317 bp distal
Cpgi13809	CpG island 13809	within coordinates
Gm66168	predicted gene, 66168	1084 bp downstream
Pitx2	paired-like homeodomain transcription factor 2	Intron
Rr584971	regulatory region 584971	1103 bp distal
Rr584972	regulatory region 584972	1506 bp proximal
Tssr31631	transcription start site region 31631	1450 bp downstream
Tssr31632	transcription start site region 31632	1416 bp downstream
Tssr31633	transcription start site region 31633	1083 bp downstream
Tssr31634	transcription start site region 31634	88 bp upstream
Tssr31635	transcription start site region 31635	127 bp upstream
Tssr35612	transcription start site region 35612	1514 bp downstream
Tssr35613	transcription start site region 35613	1840 bp downstream