rs256843371 SNP Detail

Summary

• ID
  rs256843371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128515130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAGACA CTAGATGTTG
  TAATAAGAGT CAGGGTAAAG GTGCTGAGAT TTGCATGGGT GATATTGCAA GGAGGGTATT
  TTGGGCATGG CTAATTTTAT GAAGAAAACA TTCACTTTTG GCCTCATGTT CAGTAACAAC
  TCAGCCGGCA TCTGACCAGG TGTTTTGGGG TGGCAATACT GGGTAAGATG GATCAACAGT
  R
  TTAAGTTTGG GTTGTGTAAG CTGAAAATAA AAGTTACCAC AGGTTTATGA GCCTCAGGTC
  CCACCTTTGT CAAAAGGGGA CGGGGGTGGG GGTGGGATTG CCATCTACAC CAGAAGACAC
  ACAGCGCCTA GCCTGACTGG GACAGGTGGG AAACTACAGT GAAATGCGAA TGTGTATCCT
  GCTTTCCTCA CCTTCCACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351391117	MGP_WTSI_1_130483970	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256843371					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351391117	MGP_WTSI_1_130483970	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128515130 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	806 bp downstream
Rr12058	regulatory region 12058	271 bp proximal
Rr28453	regulatory region 28453	1470 bp proximal
Tssr195	transcription start site region 195	452 bp upstream
Tssr13461	transcription start site region 13461	1025 bp downstream
Tssr13462	transcription start site region 13462	1211 bp downstream
Tssr13463	transcription start site region 13463	1307 bp downstream
Tssr13464	transcription start site region 13464	1364 bp downstream
Tssr13465	transcription start site region 13465	1382 bp downstream
Tssr13466	transcription start site region 13466	1447 bp downstream
Tssr13467	transcription start site region 13467	1494 bp downstream
Tssr13468	transcription start site region 13468	1583 bp downstream
Tssr13469	transcription start site region 13469	1636 bp downstream
Tssr13470	transcription start site region 13470	1731 bp downstream
Tssr13471	transcription start site region 13471	1800 bp downstream
Tssr13472	transcription start site region 13472	1869 bp downstream
Tssr13473	transcription start site region 13473	1882 bp downstream
Tssr13474	transcription start site region 13474	1938 bp downstream
Tssr13475	transcription start site region 13475	1962 bp downstream
Tssr13476	transcription start site region 13476	1979 bp downstream