rs256846461 SNP Detail

Summary

• ID
  rs256846461
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:18268052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCACCAC CCCTCAGCAT
  CCCAAGAAAG TTCTTCAGGC TCCAGCTTAG CAAGGTTTAA GCAACTGCTA CAGATATGAA
  GAGGTCTATT TTTAAAGCAA AAATCTCCCT TGTCGTTATA AAAATAAATC ATATTCAGGC
  TGGGGATGAA GTGAAGTTGG TCGAGGGCTT GCCTAACTTT CATGACACCC TGGGGGGGGT
  M
  CTCAGTGCTA CATAAAACTA GGCATGGTTG CACACATCTA TAGTCCCAGA ACTCAGAGGT
  AGAGGCAGGA GAATCATAAA TTTAAGGTCA TCGTCTATAT AGCAAGTGTG AAGTTTGGGT
  TCAGTTTGGG CTATATACAC CCTATCCTGG AAACAAACAA ACAAACAAAT AAATCATACT
  TGTAAAAATT CAAATAAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss385291034	MGP_WTSI_12_18224857	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs256846461					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385291034	MGP_WTSI_12_18224857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:18268052 () rs orientation: forward

Symbol	Name	Function Class
Bnip3l-ps	BCL2/adenovirus E1B interacting protein 3-like, pseudogene	797 bp downstream
Gm40879	predicted gene, 40879	1878 bp upstream
Gm58964	predicted gene, 58964	378 bp downstream
Tssr112909	transcription start site region 112909	833 bp downstream