rs256855505 SNP Detail

Summary

• ID
  rs256855505
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108145440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGC TTCGTCTTCG CGCAGCGGCG
  R
  CGCCACACTC CGGCCGGGAC CCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324152849	CHEV_12_109417391	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256855505					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108145440 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	398 bp upstream
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	148 bp upstream
Rr472439	regulatory region 472439	within coordinates
Rr472440	regulatory region 472440	25 bp proximal
Rr472441	regulatory region 472441	568 bp proximal
Rr472442	regulatory region 472442	722 bp proximal
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	684 bp downstream
Tssr114949	transcription start site region 114949	321 bp downstream
Tssr114950	transcription start site region 114950	47 bp downstream
Tssr114951	transcription start site region 114951	12 bp downstream
Tssr114952	transcription start site region 114952	362 bp upstream
Tssr114953	transcription start site region 114953	612 bp upstream
Tssr114954	transcription start site region 114954	727 bp upstream
Tssr117676	transcription start site region 117676	29 bp downstream
Tssr117677	transcription start site region 117677	56 bp downstream