rs256860002 SNP Detail

Summary

• ID
  rs256860002
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:104729965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCACACC TTCCATCAAA
  GCCAGGGCCA TAAAAGTTCT GGATTTGATC CTCTCATAGA CGTAAAACTC CAAAATTGAG
  GACTGGAGAG ATGGCTCAGC AGTTACTGGC TGAACCACTT GCTCTTCCCA AGTTCAAGTC
  CCAGCACTCA CATGGCAGCT CACAATTGTC TGTAACTCCA GTTCCAGGGG ATTGGATACC
  S
  TCACATAGAC ATGCATGCAG ACAAAATACC AATGCACATA AAATAAAAAC AAATCATTGA
  AAAATGCTCC AAAAACAAAC AAACAAGCAA AAAAATCCTC CAAGTTGGGA GGAACCACAC
  AGATTTTATC TGTTCCCTCT CCTTCCCTGA ATCTATTTTT AAAACAATCT CTCTGCTCCA
  CTAAATAATG CCTTAGTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323170384	CHEV_9_104755096	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256860002					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:104729965 () rs orientation: forward

Symbol	Name	Function Class
Cpne4	copine IV	within coordinates
Rr198572	regulatory region 198572	436 bp proximal
Tssr86829	transcription start site region 86829	1691 bp upstream