rs256881027 SNP Detail

Summary

• ID
  rs256881027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:79409271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAAGGC TTAAGTTCCG
  AAGTTCCGGC TGATACTGTC CACTTAACTC AGTGTGTGAG GTCACCTATG TGTGTTGTTT
  TCAGTAGCCT CACGCTCTAA AGTGACATTG TCAGTGCTGA GGATAATGGG CTCTTCTGGA
  CATCCCCAAG CATAGTGTCT CTCTCTGAGA GAGCTGAGCT GTCTCTTAAC GTGAAGGAGG
  R
  ACAAGCTCAG ACTGTTAGAT ACTAGTTTCT GTGTATGATA AGAAATTCAT TTTTCCAGGA
  CTCTGAAGAT GCAATAGAAG GTTTTGACAG TTTGAGTAGT TTGTATTTCT TTACCCAGTT
  ACCACTAGCA TAGTAGAATG ATGATGACAA ATGACACCCT TCTTGTTCAT TCTCTCTCTT
  GTTTGTTTGT TTGTTTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383980615	MGP_WTSI_11_79331947	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256881027					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383980615	MGP_WTSI_11_79331947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79409271 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	Intron
Evi2b	ecotropic viral integration site 2b	Intron
Nf1	neurofibromin 1	Intron
Rr402773	regulatory region 402773	1467 bp upstream
Rr452267	regulatory region 452267	1105 bp proximal
Tssr103448	transcription start site region 103448	1767 bp upstream
Tssr109494	transcription start site region 109494	1998 bp upstream
Tssr109495	transcription start site region 109495	1962 bp upstream
Tssr109496	transcription start site region 109496	1941 bp upstream
Tssr109497	transcription start site region 109497	1890 bp upstream
Tssr109498	transcription start site region 109498	1848 bp upstream
Tssr109499	transcription start site region 109499	1812 bp upstream
Tssr109500	transcription start site region 109500	1781 bp upstream
Tssr109501	transcription start site region 109501	1741 bp upstream
Tssr109502	transcription start site region 109502	1717 bp upstream
Tssr109503	transcription start site region 109503	1640 bp upstream
Tssr109504	transcription start site region 109504	226 bp downstream
Tssr109505	transcription start site region 109505	385 bp downstream
Tssr109506	transcription start site region 109506	908 bp downstream