rs256881367 SNP Detail

Summary

• ID
  rs256881367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82048703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGTGGG GTGGAGTGAT
  AAGGTGCCAT AGAGAGAAGC TTTGAAACAG TCAGTCTTAG GGTGAACCTG TGGCAGAGAA
  GAAAACCTGT GGAAAGTCCT ATTGAAAATA GCTCTTCTGG GTGAGACAGT TGAACGGGCT
  CCAGCCTTGG GCTATGGAGA CTGGAGAAGT CAGTACTTCA TTCCCTCCCC ACCCCCCCTC
  Y
  CCACCCCTCC CACCCCGAAC TGCAGAGGTG CCTTCTGGGT GCCTGGGAAA GGAGGAGAGA
  GCCGGACAGA GAGAACTAGG AGGCCACATT GAGTTGCTCT AGGTTTCTTG TGTGCTTTTT
  CTCTTGGGGG TGGGGTGTAG GCATGTGAAT GTGCTGATAG TGGAAGCCAG AGCAAAGCAT
  GTAGCCTTGG CGGCATGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394735177	MGP_WTSI_15_81994932	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256881367					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394735177	MGP_WTSI_15_81994932	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82048703 () rs orientation: forward

Symbol	Name	Function Class
Rr369971	regulatory region 369971	1681 bp upstream
Rr404532	regulatory region 404532	375 bp downstream
Rr506422	regulatory region 506422	1955 bp distal
Rr506423	regulatory region 506423	773 bp distal
Rr506424	regulatory region 506424	301 bp distal
Rr506425	regulatory region 506425	971 bp proximal
Rr506426	regulatory region 506426	974 bp proximal
Srebf2	sterol regulatory element binding factor 2	within coordinates