rs256906008 SNP Detail

Summary

• ID
  rs256906008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174186727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTTTCA CAGACCCAGT
  AGATAGGAAG GGAACTTCGT CTTTGCTTCC TGTTCAAAGT GGTGAATGCA AGAACAGCCC
  CTTTGTGCCC ACAGCTTGTC TTGGCTCAGT TCTCAATAAT GAATGAGAGT CTTCCAAAGC
  AGACAGGGAG AGGGCTGGCT CTGCTTTGTC CTGGACAGAG ACCTGTGCAC CCTTAAACCC
  R
  CACTTGTACA TTGCTTTAGG AAAGGGATGA AGTTTTAAAC TTCTCTTACA TGTCAAAAGC
  AAGGGCGGAT CCCACCACCA CTTGCCTTAC GGGGTACACA CTTGGCACAC ACTGACCACC
  GTGTCTCCTT TTCTTTCAAG CTTCCTGGAC AAGATTGATG TGATCAAGCA GGCCGACTAC
  GTGCCAAGTG ACCAGGTACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356687542	MGP_WTSI_2_174170435	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256906008					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356687542	MGP_WTSI_2_174170435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174186727 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	within coordinates
Rr397554	regulatory region 397554	511 bp downstream
Rr572112	regulatory region 572112	607 bp distal
Tssr792	transcription start site region 792	1400 bp upstream
Tssr22135	transcription start site region 22135	1669 bp downstream
Tssr22136	transcription start site region 22136	531 bp downstream
Tssr22137	transcription start site region 22137	458 bp upstream
Tssr22138	transcription start site region 22138	554 bp upstream
Tssr22139	transcription start site region 22139	1066 bp upstream
Tssr22140	transcription start site region 22140	1320 bp upstream
Tssr22141	transcription start site region 22141	1383 bp upstream
Tssr22142	transcription start site region 22142	1423 bp upstream
Tssr22143	transcription start site region 22143	1518 bp upstream
Tssr22144	transcription start site region 22144	1633 bp upstream
Tssr22145	transcription start site region 22145	1662 bp upstream
Tssr22146	transcription start site region 22146	1668 bp upstream
Tssr28013	transcription start site region 28013	179 bp downstream
Tssr28014	transcription start site region 28014	542 bp downstream