rs256909932 SNP Detail

Summary

• ID
  rs256909932
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57800018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACCAAT CAGCTTGCCT
  TTCTTTGTCT GGATTACCCA ATCCCCTGTA GTAGCCTGAA TCAGCCAACT AAGAGGGAAA
  GGAAGAACTC ACCCCATCCC CAAACATAAA ACTTTAGCAC TGCCTGACAC AACTCTGATT
  TCCAGGTCTT CTGCATTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCCCTCCCTC
  Y
  CTCCCTCCCT CCAGGTGCTG AGACCTTGTT TTTACTGCCT TATTTTTTTA AATCAGCACA
  GAAAAAAAGT CCATTCCAAA AAACTCTTGA CAACCAACGT CACTATGATG GCATCAAATC
  AACAAAGCAG TAGATTAAAA AAAAACAAAA AAAAAACTGA TGACAAGCAA CAATCTTAGC
  GCATCATATT TGATGTTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss368438956	MGP_WTSI_6_57773027	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256909932					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368438956	MGP_WTSI_6_57773027	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57800018 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17487	CpG island 17487			1395 bp proximal
Rr399671	regulatory region 399671			within coordinates
Rr631165	regulatory region 631165			within coordinates
Rr631166	regulatory region 631166			454 bp proximal
Rr631167	regulatory region 631167			1148 bp proximal
Rr631168	regulatory region 631168			1436 bp proximal
Tssr56734	transcription start site region 56734			679 bp upstream
Tssr56735	transcription start site region 56735			1452 bp upstream
Tssr56736	transcription start site region 56736			1504 bp upstream
Tssr56737	transcription start site region 56737			1612 bp upstream
Tssr61164	transcription start site region 61164			1600 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant