rs256913476 SNP Detail

Summary

• ID
  rs256913476
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47121671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCCAC CCCCGCGCCC
  CTTCACAGCC GCATTGCAAG TTTTCAGCGC GGGGAGGATC TGTTGCTGGT GCTGGCGTTC
  GCAGACACAG CCCCAGAGGC CACTCCGGGT GGGGTGTGCA GGGAGCACTT GCGGGTCACA
  GCCGCAGCAA CAGGAAGCCG CGGGGTCTCC TCCCGCACCT GGGAAGGAAG TGTGCAATAG
  M
  TCAGCTCGCG CATCCGAGTG TGGAGAGGCC GGCTGGAATT TAGGGGACTT CCCTTCGCGG
  GACACCCCTT CCCCCAGCCT TGGCTTCCAC ACACCCCCTA CCGAGCTCCC TCTCACTCCC
  GGATCCCCCT AGACGCTCCA GTCCGCGTGC CGAGGTCTCA CTGCAGCTTT TTCTGTCCTT
  TCAGTAGTGA TTGCCGCTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss390996439	MGP_WTSI_14_47503889	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs256913476					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390996439	MGP_WTSI_14_47503889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47121671 () rs orientation: forward

Symbol	Name	Function Class
2810457G06Rik	RIKEN cDNA 2810457G06 gene	within coordinates
Cpgi6376	CpG island 6376	within coordinates
Gm34934	predicted gene, 34934	1496 bp upstream
Rr297079	regulatory region 297079	within coordinates
Samd4	sterile alpha motif domain containing 4	within coordinates
Tssr4382	transcription start site region 4382	164 bp downstream
Tssr125240	transcription start site region 125240	1278 bp downstream
Tssr125241	transcription start site region 125241	1241 bp downstream
Tssr125242	transcription start site region 125242	1215 bp downstream
Tssr125243	transcription start site region 125243	362 bp upstream
Tssr128301	transcription start site region 128301	773 bp downstream