rs256919773 SNP Detail

Summary

• ID
  rs256919773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144995759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTA AAGGCTTCCT GCTCTGTCCA
  Y
  ACACACACTC CCCTGCCAAG ACAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322067444	CHEV_6_144998553	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256919773					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144995759 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	820 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Tssr2055	transcription start site region 2055	954 bp upstream
Tssr59519	transcription start site region 59519	1485 bp downstream
Tssr64036	transcription start site region 64036	1441 bp upstream
Tssr64037	transcription start site region 64037	1391 bp upstream
Tssr64038	transcription start site region 64038	1363 bp upstream
Tssr64039	transcription start site region 64039	1346 bp upstream
Tssr64040	transcription start site region 64040	1327 bp upstream
Tssr64041	transcription start site region 64041	1304 bp upstream
Tssr64042	transcription start site region 64042	1286 bp upstream
Tssr64043	transcription start site region 64043	1228 bp upstream
Tssr64044	transcription start site region 64044	1212 bp upstream
Tssr64045	transcription start site region 64045	1180 bp upstream